Phylogenetic Analysis

Phylogenetic Analysis

Multiple sequence alignment

• ClustalW (Multiple sequence alignement at WUSTL, USA)

• Multiple sequence alignment (at Baylor College of Medecine, USA)

• BOXSHADE (Software for visual information on aligned regions at ISREC, Switzerland)

• TaxPlot (3-way comparisons of genomes based on encoded proteins at NCBI)

• ClustalW (at EBI, UK)

• ClustalW (at the Baylor College of Medicine, USA).

• AMAS (Analyze multiple aligned sequences at Oxford University, UK).

• ConSurf (Identification of functional regions in proteins by surface-mapping of fhylogenetic information at Tel Aviv University, Israel)

• Entrez-PopSet (Search set of DNA sequences from populations of related individuals/organisms at NCBI)

• Phylogeny software tools and servers (at the University of Washington, USA)

Organism classification

• NCBI Taxonomy

• TreeBASE (database of phylogenetic knowledge hosted by the University at Buffalo, USA)

• The Tree of Life Project